PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17242_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 187aa    MW: 21035.8 Da    PI: 9.904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17242_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-172070255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                         ++ GVr+++ +grWvAeI++    + k+ r +lg+f+taeeAa a++ a++ l+g
  cra_locus_17242_iso_1_len_875_ver_3 20 KFVGVRQRP-SGRWVAEIKVT---QmKKLRLWLGTFDTAEEAASAYDSAARLLRG 70
                                         799******.7*********4...5667***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-292080No hitNo description
PROSITE profilePS5103220.2572078IPR001471AP2/ERF domain
PfamPF008471.7E-112070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-282078IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-202079IPR016177DNA-binding domain
SMARTSM003802.8E-312084IPR001471AP2/ERF domain
PRINTSPR003679.9E-82132IPR001471AP2/ERF domain
PRINTSPR003679.9E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MESSQEQAEK HQQVKIYKRK FVGVRQRPSG RWVAEIKVTQ MKKLRLWLGT FDTAEEAASA  60
YDSAARLLRG RNAKTNFTYD NFKFIGMNQT TRLHQLLKLA IMKNLAKSSS SSSXXXNSSS  120
HLPSRAANSS KVYSSVIVAP SFSAPASSSS SHDLIVQEED DEEENRQIFQ GIDDHQELVN  180
SVFLHAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617997.16e-40PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_016450672.16e-40PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A068TQF51e-46A0A068TQF5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000632642e-38(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165